The sun rises on Wakulla River at the Edward Ball Wakulla Springs State Park. © Russell Sparkman
Watershed Stats
Size of Basin: The two watersheds cover approximately 3,600 square miles of north Florida and south Georgia. The Ochlockonee watershed's total area is 2,416 square miles, with approximately 1,080 square miles in Florida. The Apalachee-St. Marks watershed drains 1,204 square miles.
Major Cities and Towns: Tallahassee, Woodville, Quincy, Bradfordville, Havana, Greensboro, Gretna, Monticello, Crawfordville, Sopchoppy, St. Marks, and Panacea
Counties: Leon and Wakulla Counties, significant parts of Gadsden and Jefferson Counties, and smaller parts of Liberty and Franklin Counties
Major Water Features: Ochlockonee River , Ocklawaha Creek, Bradwell Bay, Sopchoppy River, Ochlockonee Bay, St. Marks River, Wakulla River, St. Marks Spring, Wakulla Springs, Apalachee Bay, Munson Slough, Ames Sink, Spring Creek, Spring Creek Springs System, Lake Munson, Lake Jackson, Fred George Sink, Meginniss Arm Branch, Jackson Heights Branch, Lake Lafayette Chain of Lakes, and Lafayette Creek
Overview

An aerial view of Wakulla Springs, one of the largest and deepest freshwater springs in the world and one of Florida's greatest natural treasures.
© Russell Sparkman
In contrast to the Ocklockonee watershed, the St. Marks River watershed is not continuous for most of its course. However, the southern coastal drainage system is composed of local streams draining coastal regions. The main stem of the St. Marks River is the only somewhat continuously connected portion of the watershed.
The spring-fed St. Marks River. © Alan Cressler
The headwaters of the St. Marks River lie in the Tallahassee Hills of northeastern Leon County. The St. Marks remains swampy and poorly defined as it flows southward to the Cody Scarp. From just north of the Leon-Wakulla County line, the St. Marks River enters the Woodville Karst Plain and is fed by Floridan aquifer springs, becoming wider and clearer as more ground water enters from spring flows.
Near the Leon-Wakulla County line, the St. Marks River flows southward to Natural Bridge, where it disappears into a sinkhole, eventually re-emerging at St. Marks Spring as a spring-run river that is considerably larger, with different chemical characteristics than the stream that disappeared at Natural Bridge. Several springs rise and disappear underground in this area.
In east-central Wakulla County, the St. Marks joins with the Wakulla River, its largest tributary. The Wakulla, a classic spring-run river, originates at Wakulla Springs and flows south for approximately 10 miles to its confluence with the St. Marks River. From there, the St. Marks River widens and flows in a dredged channel to Apalachee Bay, approximately 3 miles to the south. Tidal effects extend upstream in both the St. Marks and Wakulla Rivers for about 6 miles from the river mouth.
Big Dismal sink at the Leon Sinks Geological Area is one of hundreds of natural sink holes that dot the landscape in Leon and Wakulla counties. The sink holes and other "karst" features are windows into the watershed's aquifer. © Alan Cressler
There are 329 lakes in the St. Marks watershed, totaling 11,892 acres. Lake Miccosukee, one of the largest, is grass filled and contains only small, open water areas. It is connected by small streams to a wetland area and sinkhole to the south. Lake Lafayette is an area of freshwater marsh and limited open water on the eastern side of Tallahassee. It consists of four separate parts: Upper Lake Lafayette, Lake Piney Z, Alford Arm, and Lower Lake Lafayette. Its watershed includes the eastern part of the city, as well as unincorporated residential and undeveloped areas east and northeast of the city. Like other lakes in the region, it periodically drains through sinkholes. Water levels are partially maintained by a series of man-made dikes that divide the lake into three segments.
The Wakulla Spring-Leon Sinks Cave system is the longest underwater cave in the United States and the fourth largest underwater cave in the world.
In the Woodville Karst Plain, there are hundreds of small lakes and ponds. These are deeper and steeper than those in the Tallahassee Hills and may have formed in collapsed sinkholes. There are also several larger, shallow lakes that formed in solution depressions in the southern part of the St. Marks watershed. The larger natural lakes in this area include Lake Ellen and Otter Lake in Wakulla County. In the St. Marks National Wildlife Refuge, several large shallow impoundments are manipulated to provide waterfowl habitat. The largest include East Pool and Stoney Bayou Pool.
Human Impacts

Polluted stormwater runoff in the watershed is a threat to both lakes and springs in the watershed.
Out of more than 50 lakes and ponds within the city of Tallahassee, most receive urban stormwater runoff and many have become degraded by nutrients and sedimentation. The Lake Munson drainage area, the largest and most urbanized in the region, drains approximately 57 percent of the urban Tallahassee area. For more than 60 years, Lake Munson received a heavy load of nutrients, toxics, and sediments from stormwater runoff and treated sewage effluent. In 1982, it was classified as hypereutrophic and the seventh most degraded lake in the state. The discharges of treated sewage were eliminated in 1984, improving water quality to the point that the lake was reclassified as eutrophic.
However, runoff from more than 23,000 acres, including more than half of Tallahassee, continues to flow into Lake Munson from Munson Slough. Problems observed in recent years include fish kills, algal blooms, invasive exotic species, high nutrient and bacteria levels, low dissolved oxygen levels, reduced numbers and low productivity of game fish, and reports of fish with sores. Pesticides and metals concentrations are found in amounts that are 10 to 100 times greater than other area lakes. The accumulation of organic muck, degraded water quality, and reduced water depth lowered fish biomass by at least 75 percent between 1976 and 1987. As a result, sport fishing was all but eliminated. In addition, water flowing from Lake Munson enters a series of sinkholes and flows eight miles underground to Wakulla Spring, contributing to increased nutrient levels in the spring and river.

A dye trace study at Ames Sink south of Tallahassee confirmed that polluted water from Lake Munson flows under ground eight miles before emerging at Wakulla Spring.
Invasive aquatic vegetation is also a problem in Wakulla Spring. Dominant invasive plants include hydrilla, water hyacinth, and water lettuce. Although hydrilla has been present in the lower Wakulla River for years, it was just discovered in the Wakulla Springs pool relatively recently, where it has quickly formed dense beds and replaced native eelgrass. There appears to be a correlation between hydrilla growth and increased nutrient concentrations in the spring water. The city of Tallahassee's Southwest Farm Wastewater Reuse Facility has been identified as a principal source of nitrate in ground water that flows to Wakulla Spring. Other sources of nitrogen in the ground water flowing from Wakulla Spring are believed to come from the thousands of septic tanks that exist throughout Wakulla County and southern Leon County.
There has also been a conspicuous decline in the limpkin population along the Wakulla River. The decline of this state-listed species is related to the disappearance of apple snails, a primary food source. It is thought that their decline may be related to the hydrilla infestation. The accelerated growth of dense algal mats has also been observed in the Wakulla River; this may be caused by the increased nutrient concentrations discharged by springs.
In recognition of these impacts, FDEP, the Northwest Florida Water Management District (NWFWMD), and local governmental, scientific, educational, and citizen organizations are working to develop strategies for protecting and restoring water quality and quantity in the St. Marks Basin.
Interesting Facts:
- The St. Marks River disappears into a sinkhole at Natural Bridge and emerges at St. Marks Spring as a spring-run river that is considerably larger and has different chemical characteristics. Wakulla Springs is one of the largest and deepest freshwater springs in the world, with an average discharge of 252 million gallons per day.
- The Wakulla Spring-Leon Sinks Cave system is the longest underwater cave in the United States and the fourth largest underwater cave in the world.
- In December 2007, divers from the Wakulla Karst Plain Project set two world records, including the longest cave dive between two entrances and the longest traverse in a deep cave by traveling a distance of nearly seven miles. The feat required the divers to be under water for more than 20 hours.
Florida Department of Environmental Protection, Northwest Florida Water Management District, and local governmental, scientific, educational, and citizen organizations are working on numerous projects to restore and protect the Ochlockonee River and St. Marks River watersheds. The following are some of the major watershed restoration initiatives.
Watershed Restoration Program
The Florida Department of Environmental Protection has implemented a Watershed Restoration Program to identify "impaired" waters and develop plans to reduce that pollution in springs, rivers, lakes, and streams in the Ochlockonee-St. Marks watersheds.
Additional Information:
FDEP TMDL Program Website
FDEP Ochlockonee-St. Marks Assessment Report Website
Aquifer Protection Program
This city of Tallahassee program was established to protect wellheads, delineate high-recharge areas and areas most susceptible to ground water contamination, and identify contaminated areas. It is responsible for implementing the 1992 Aquifer Recharge/Wellhead Protection Ordinance.
Additional Information:
City of Tallahassee Aquifer Protection Program
Big Bend Seagrasses Aquatic Preserve
Established in 1985, the 945,000-acre preserve stretches along the whole of the Big Bend, from Wakulla County through Jefferson, Taylor, Dixie and Levy Counties. It consists mainly of a large, remote, and undeveloped expanse of tidal lands, islands, seagrass beds, shallow banks, and submerged bottoms extending nine miles into the Gulf of Mexico, as well as all natural waterways tidally connected to the preserve.
Additional Information:
FDEP Big Bend Seagrasses Aquatic Preserve Website
FDEP About the Big Bend Seagrasses Aquatic Preserve
FDEP Big Bend Seagrasses Aquatic Preserve Fact Sheet (PDF)
FDEP Big Bend Seagrasses Aquatic Preserve Management Plan (PDF)
Florida Springs Initiative
FDEP created this comprehensive springs protection effort in 2001 to implement the recommendations of the 2000 Florida Springs Task Force Report. The Florida Legislature provided $17.4 million from 2001 to 2006 to fund research, monitoring, education, and landowner assistance projects. Current funding is $2.4 million per year.
Additional Information:
Florida Springs Initiative Website
Florida Springs: Protecting Nature's Gems
FDEP Florida Springs Initiative 2007 Program Summary and Recommendations (PDF)
Florida Springs Task Force
In 1999, Governor Jeb Bush initiated the Florida Springs Initiative to help protect and restore the state's 600 springs. This included the formation of a multiagency Florida Springs Task Force chaired by FDEP to recommend strategies for protecting and restoring Florida's springs. Several important projects have been initiated to monitor and protect the springs of the St. Marks watershed.
Additional Information:
Florida Springs Task Force Website
Florida Springs Task Force 2000 Report (PDF)
Lake Jackson Aquatic Preserve
The Lake Jackson, Carr Lake, and Mallard Pond ecosystem is a valuable biological, aesthetic, and recreational resource. In 1974, the Florida Legislature designated this 4,700-acre area as an Aquatic Preserve to preserve and maintain its biological resources in their essentially natural condition.
Additional Information:
FDEP Lake Jackson Aquatic Preserve
Lake Jackson Restoration
Beginning in 1990, an interagency team-including the NWFWMD, FDEP, Florida Fish and Wildlife Conservation Commission, and Leon County-conducted several phases of a restoration effort after prolonged drought and sinkholes drained the lake and provided access.
Additional Information:
Florida Department of Natural Resources Lake Jackson Aquatic Preserve Management Plan
Lake Munson Restoration
Lake Munson, a 225-acre impoundment, receives stormwater from Tallahassee and provides floodwater equalization for areas downstream. Sediment and accumulated organic muck have choked the lake and blanketed the bottom. A number of restoration projects are currently under way.
Additional Information:
Leon County Lake Munson Restoration Website
Stormwater Management
In accordance with the 1990 Tallahassee-Leon County Comprehensive Plan, a stormwater ordinance and a stormwater utilities department were created. From the resulting Stormwater Master Plan, local planners developed a list of approximately 20 capital improvement projects to address flooding and drainage improvements. The city has constructed 11 regional facilities that incorporate water quality treatment and flood prevention into their design. Other activities include development guidelines, permitting requirements, stormwater retrofits, nonstructural stormwater practices, and lake restoration.
Additional Information:
City of Tallahassee Stormwater Website
Surface Water Improvement and Management (SWIM) Plans
A number of waterbodies in the Ochlockonee-St. Marks watershed are designated as SWIM priority waterbodies for protection and restoration. In the Ochlockonee watershed, these waters are the Ochlockonee River and Bay, Lake Iamonia, and Lake Jackson. The Lake Jackson SWIM Plan was submitted in 1990 and updated in 1994 and 1997. In the St. Marks watershed, the St. Marks River (including the Wakulla River and Apalachee Bay), Lake Munson, and Lake Miccosukee are SWIM waterbodies. A SWIM Plan was developed in 1997 for the St. Marks River, Wakulla River, and Apalachee Bay. The NWFWMD, which oversees the SWIM Program, is working with federal, state, and local government and the private sector to restore these damaged ecosystems, prevent pollution from runoff and other sources, and educate the public.
Additional Information:
NWFWMD SWIM Plan Website
City of Tallahassee-Water Reuse Facility
The recently opened the Tram Road Wastewater Reuse Facility is the first in the Tallahassee area to provide reclaimed or recycled wastewater for the irrigation of public areas, such as golf courses and roadsides. The facility will divert 1.2 million gallons of wastewater headed to the Southeast Farm Wastewater Reuse and Sprayfield daily and provide further treatment so that it can be reused for public irrigation. The Tram Road facility is part of a $200 million, multiyear commitment by the city of Tallahassee to further improve wastewater treatment and minimize impacts on ground water flowing to Wakulla Spring.
Additional Information:
Tram Road Wastewater Reuse Facility
Wakulla County Aquifer and Springs Protection
The Wakulla County Board of Commissioners has passed ordinances requiring the use of "performance-based septic systems." These systems reduce nitrogen, a byproduct of human waste and a major contributor to the deterioration of Florida springs. Such systems can cut levels as much as 70 percent. Other aquifer protection efforts include increasing development setbacks to prevent polluted stormwater from entering sinkholes in the county.
Additional Information:
Wakulla County Website
LIFE - Wakulla Springs State Park
Started in 2005, this program is a unique partnership between DEP, the University of Florida IFAS Extension (Wakulla and Leon Counties) and the Wakulla County School District. Approximately 300 sixth, seventh and eighth grade students and teachers from Riversprings Middle School conduct two field experiences each year. All the topics relate to the Wakulla Springs springshed. Sixth grade topics focus on ecosystems and wildlife, seventh grade emphasizes water quality monitoring, and eighth grade examines the areas unique Karst features. Field sites include the Wakulla Springs State Park, St. Marks National Wildlife Refuge, Lake Munson Preserve Park and the Leon Sinks Geological Area.
Additional Information:
Wakulla Spring LIFE Program
Florida Friendly Landscaping Education
FDEP has supported educational efforts to encourage landscape maintenance companies and citizens to adopt Florida-friendly landscaping practices, which minimize the use of fertilizers and reduce water consumption.
Additional Information:
Florida-Friendly Landscaping Website